Publications & Works

Publication Network
Journal articles indexed in SCI, SSCI, and AHCI

Comprehensive bibliometric analysis and perspectives on therapies targeting colon cancer stem cells over a 40-year period

BERK Ş.
Regenerative Therapy , vol.29, pp.19-34, 2025 (SCI-Expanded) identifier

Evaluation and normalization of a set of reliable reference genes for quantitative sgk-1 gene expression analysis in Caenorhabditis elegans-focused cancer research

Özdemir Ö. Ü., Yurt K., PEKTAŞ A. N., BERK Ş.
Nucleosides, Nucleotides and Nucleic Acids , vol.44, no.2, pp.91-110, 2025 (SCI-Expanded) identifier identifier

Insulin and IGF-1 extend the lifespan of Caenorhabditis elegans by inhibiting insulin/insulin-like signaling and mTOR signaling pathways: C. elegans - Focused cancer research

BERK Ş.
Biochemical and Biophysical Research Communications , vol.729, 2024 (SCI-Expanded) identifier identifier

Lifespan extension with mTOR inhibitors rapamycin, everolimus, and temsirolimus in Caenorhabditis elegans (Maupas, 1899)

Demirel T., Özdemir Ö. Ü., Berk Ş.
RUSSIAN JOURNAL OF NEMATOLOGY , vol.32, no.11, pp.15-30, 2024 (SCI-Expanded)

The combination of metformin and high glucose increased longevity of Caenorhabditis elegans a DAF-16/FOXO-independent manner: cancer/diabetic model via C. elegans

Berk Ş., Cetin A., Özdemir Ö. Ü., Pektaş A. N., Yurtcu N., Durna Daştan S.
Frontiers in Endocrinology , vol.15, 2024 (SCI-Expanded) Creative Commons License identifier identifier

A comprehensive and current review on the role of flavonoids in lung cancer–Experimental and theoretical approaches

BERK Ş., KAYA S., Akkol E. K., BARDAKCI H.
Phytomedicine , vol.98, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

Modifying Effects of Glucose and Insulin/Insulin-Like Growth Factors on Colon Cancer Cells

Berk Ş., Janssen J. A. M. J. L., Van Koetsveld P. M., Dogan F., Değerli N., Özcan S., et al.
FRONTIERS IN ONCOLOGY , vol.11, 2021 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier

Amoebicidal activity of the rhizomes and aerial parts of Allium sivasicum on Entamoeba histolytica

Degerli S., Berk Ş., Tepe B., Malatyali E.
PARASITOLOGY RESEARCH , vol.111, no.1, pp.59-64, 2012 (SCI-Expanded) identifier identifier identifier

In vitro amoebicidal activities of Satureja cuneifolia and Melissa officinalis on Acanthamoeba castellanii cysts and trophozoites

Malatyali E., Tepe B., Degerli S., Berk Ş.
PARASITOLOGY RESEARCH , vol.110, no.6, pp.2175-2180, 2012 (SCI-Expanded) identifier identifier identifier

In vitro amoebicidal activity of Origanum syriacum and Origanum laevigatum on Acanthamoeba castellanii cysts and trophozoites

DEĞERLİ S., TEPE B., ÇELİKSÖZ A., BERK Ş., MALATYALI E.
EXPERIMENTAL PARASITOLOGY , vol.131, no.1, pp.20-24, 2012 (SCI-Expanded) identifier

In vitro amoebicidal activities of Teucrium polium and T. chamaedrys on Acanthamoeba castellanii trophozoites and cysts

TEPE B., MALATYALI E., DEĞERLİ S., BERK Ş.
PARASITOLOGY RESEARCH , vol.110, no.5, pp.1773-1778, 2012 (SCI-Expanded) identifier

Screening of the in vitro amoebicidal activities of Pastinaca armenea (Fisch & CAMey.) and Inula oculus-christi (L.) on Acanthamoeba castellanii cysts and trophozoites

DEĞERLİ S., BERK Ş., MALATYALI E., TEPE B.
PARASITOLOGY RESEARCH , vol.110, no.2, pp.565-570, 2012 (SCI-Expanded) identifier identifier identifier

In vitro amoebicidal activity of four Peucedanum species on Acanthamoeba castellanii cysts and trophozoites

MALATYALI E., TEPE B., DEĞERLİ S., BERK Ş., AKPULAT H. A.
PARASITOLOGY RESEARCH , vol.110, no.1, pp.167-174, 2012 (SCI-Expanded) identifier identifier identifier

Screening of the antioxidant, antimicrobial and DNA damage protection potentials of the aqueous extract of Inula oculus-christi

BERK Ş., TEPE B., ARSLAN S.
AFRICAN JOURNAL OF PHARMACY AND PHARMACOLOGY , vol.5, no.14, pp.1695-1702, 2011 (SCI-Expanded) identifier identifier

Screening of the antioxidant, antimicrobial and DNA damage protection potentials of the aqueous extract of Asplenium ceterach DC

BERK Ş., TEPE B., ARSLAN S., Sarikurkcu C.
AFRICAN JOURNAL OF BIOTECHNOLOGY , vol.10, no.44, pp.8902-8908, 2011 (SCI-Expanded) identifier identifier

Chemical Composition, Radical Scavenging and Antimicrobial Activity of the Essential Oils of Thymus boveii and Thymus hyemalis

TEPE B., Sarikurkcu C., BERK Ş., Alim A., AKPULAT H. A.
RECORDS OF NATURAL PRODUCTS , vol.5, no.3, pp.208-220, 2011 (SCI-Expanded) identifier identifier
Articles Published in Other Journals

Visualization of scientific production in Caenorhabditis elegans: a bibliometric analysis (1980–2023)

BERK Ş., ÖZDEMİR S., PEKTAŞ A. N.
Genomics and Informatics , vol.22, no.3, 2024 (Scopus) identifier identifier

Aloe vera Gel Extract Prolongs Lifespan in Caenorhabditis elegans

BERK Ş.
CUMHURIYET SCIENCE JOURNAL , vol.45, no.1, pp.40-46, 2024 (Peer-Reviewed Journal) identifier

DNA Barcoding of Commercial Cockroaches in Turkey

BERK Ş., PEKTAŞ A. N.
CUMHURIYET SCIENCE JOURNAL , vol.44, no.1, pp.28-35, 2023 (Peer-Reviewed Journal) Creative Commons License identifier

A Review on Biomaterials for Organoid Modeling and Tumor Spheroids

BERK Ş.
Journal of Physical Chemistry and Functional Materials , vol.5, no.2, pp.1-6, 2022 (Peer-Reviewed Journal)

Identification and Validation of Reference Genes for RT-qPCR Normalization in Nauphoeta cinerea (Olivier, 1789) (Blattodea, Blaberidae)

Özcan K., Pektaş A. N., Berk Ş.
Bilge International Journal of Science and Technology Research , vol.6, no.1, pp.62-72, 2022 (Peer-Reviewed Journal)

Selection and Validation of Potential Reference Genes for Quantitative Real-Time PCR Analysis in Blaptica Dubia (Serville, 1838) (Blattidae, Blaberidae)

KARAKAŞ E. U., PEKTAŞ A. N., BERK Ş.
CUMHURIYET SCIENCE JOURNAL , vol.43, no.2, pp.176-182, 2022 (Peer-Reviewed Journal) identifier

Selection and Validation of Reference Genes for Quantitative Real-time PCR in the Mealworm Beetle, Tenebrio molitorL. (Coleoptera: Tenebrionidae)

Berk Ş., Pektaş A. N.
IOSR Journal of Agriculture and Veterinary Science (IOSR-JAVS) (2020) , vol.13, pp.44-50, 2020 (Peer-Reviewed Journal)
Papers Presented at Peer-Reviewed Scientific Conferences

Regeneration and Wound Healing in Caenorhabditis elegans

Özdemir Ö. Ü., Berk Ş.
UMTEB – XVI International Scientific Research Congress, Adana, Turkey, 6 - 08 December 2024, pp.68-73, (Full Text)

Caenorhabditis elegans and Infection

Emlik N. N., Berk Ş.
UMTEB – XVI International Scientific Research Congress, Adana, Turkey, 6 - 08 December 2024, pp.74-83, (Full Text)

The Role of the Microenvironment in Tumor Progression

Nar Y., Berk Ş.
4. BİLSEL INTERNATIONAL ÇATALHÖYÜK SCIENTIFIC RESEARCHES CONGRESS, Konya, Turkey, 23 - 24 November 2024, pp.682-698, (Full Text)

The Role of Chromosomes in Inheritance and Chromosomal Abnormalities

Ceylani H. N., Berk Ş.
4. BİLSEL INTERNATIONAL ÇATALHÖYÜK SCIENTIFIC RESEARCHES CONGRESS, Konya, Turkey, 23 - 24 November 2024, pp.670-681, (Full Text)

Caenorhabditis elegans in Neurodegenerative Disease Models

Ceylani H. N., Berk Ş.
LATIN AMERICA 9th INTERNATIONAL CONFERENCE ON SCIENTIFIC RESEARCHES, Mexico City, Mexico, 9 - 11 August 2024, pp.241-251, (Full Text)

Genes and Longevity: Caenorhabditis elegans

Emlik N. N., Berk Ş.
LATIN AMERICA 9th INTERNATIONAL CONFERENCE ON SCIENTIFIC RESEARCHES, Mexico City, Mexico, 9 - 11 August 2024, pp.258-275, (Full Text)

EPITHELIAL-MESENCHYMAL TRANSITION MECHANISM IN CANCER

Nar Y., Berk Ş.
4. BİLSEL INTERNATIONAL SUMELA SCIENTIFIC RESEARCHES CONGRESS, Trabzon, Turkey, 10 - 11 August 2024, pp.271-287, (Full Text)

EMBRYONIC STEM CELL OBTAINING, APPLICATION AND TREATMENT AREAS

Karakütük D., Berk Ş.
4. BİLSEL INTERNATIONAL SUMELA SCIENTIFIC RESEARCHES CONGRESS, Trabzon, Turkey, 10 - 11 August 2024, pp.288-302, (Full Text)

Creation of Lipidomic Profiles of Some Model Organisms

Özdemir Ö. Ü., Berk Ş.
5th International Eurasian Conference on Science, Engineering and Technology (EurasianSciEnTech 2024), Ankara, Turkey, 26 - 28 June 2024, pp.1079-1087, (Full Text)

Approaches to Modeling Biological Experimental Data with GraphPad Prism 6

Özdemir Ö. Ü., Berk Ş.
5th International Eurasian Conference on Science, Engineering and Technology (EurasianSciEnTech 2024), Ankara, Turkey, 26 - 28 June 2024, pp.1072-1078

Analysis of the effects of combinations of OSI-906, which is an inhibitor of insulin and insulin-like growth factor 1 receptors (IR/IGF-IR), and mTOR inhibitors (rapamycin, everolimus, temsirolimus) on the egg production of Caenorhabditis elegans and imaging with Scanning Electron Microscopy.

Özdemir Ö. Ü., Başyıldız B., Kaleli R., Yurt K., Berk Ş.
6. INTERNATIONAL ANTALYASCIENTIFIC RESEARCH AND INNOVATIVE STUDIES CONGRESS, Antalya, Turkey, 2 - 04 December 2023, pp.228-242, (Full Text)

Investigation of the effects of combinations of the antidiabetic drug metformin and mTOR inhibitors (rapamycin, everolimus, temsirolimus) on Caenorhabditis elegans fertilization and imaging with Scanning Electron Microscopy

Özdemir Ö. Ü., Bayram H. S., Duman İ., Karasakız E., Berk Ş.
6. INTERNATIONAL ANTALYASCIENTIFIC RESEARCH AND INNOVATIVE STUDIES CONGRESS, Antalya, Turkey, 2 - 04 December 2023, pp.213-227, (Full Text)

Caenorhabditis elegans: EFFECTS OF LİQUİD CULTURE MEDİA ON EGG PRODUCTİON

Özdemir Ö. Ü., Berk Ş.
2. INTERNATIONAL PARIS CONGRESS ON MEDICAL & HEALTH SCIENCES, Paris, France, 24 - 26 October 2023, pp.118-135, (Full Text)

GENOMIC IMPRINTING AND EPIGENETIC CHANGES IN THE EARLY EMBRYO

Emlik N. N., Berk Ş.
2. INTERNATIONAL PARIS CONGRESS ON MEDICAL & HEALTH SCIENCES, Paris, France, 24 - 26 October 2023, pp.154-168, (Full Text)

INVESTIGATION OF THE EFFECTS OF EVEROLIMUS, AN INHIBITOR OF mTOR, ON C. elegans FERTILIZATION

Demirel T., Berk Ş.
ÇANKAYA INTERNATIONAL CONGRESS ON SCIENTIFIC RESEARCH, Ankara, Turkey, 10 - 12 April 2023, pp.892-893, (Summary Text)

THE RELATIONSHIP BETWEEN METFORMIN, TYPE 2 DIABETES, COLON CANCER

Bayram H. S., Berk Ş.
INTERNATIONAL PARIS CONGRESS ON APPLIED SCIENCES, Paris, France, 1 - 03 April 2023, pp.172-181, (Full Text) Sustainable Development

TUMOR SUPPRESSOR GENES AND ONCOGENES

Demirkoparan G., Berk Ş.
7th International Innovative Studies of Contemporary Scientific Research Congress, Tokyo, Japan, 21 - 23 April 2023, pp.1038-1048, (Full Text) identifier

INDUCED PLURIPOTENT STEM CELLS

Başyıldız B., Berk Ş.
INTERNATIONAL PARIS CONGRESS ON APPLIED SCIENCES, Paris, France, 1 - 03 April 2023, pp.160-171, (Full Text) identifier identifier

Caenorhabditis elegans: LABORATORY GROWTH AND MAINTENANCE

Duman İ., Berk Ş.
7th International Conference on Innovative Studies of Contemporary Sciences, Tokyo, Japan, 21 - 23 April 2023, pp.1028-1037, (Full Text)

THE MOLECULAR MECHANISM OF CANCER METASTASIS

Kaleli R., Berk Ş.
Latin American International Congress on Natural and Applied Sciences -IV, Rio De Janeiro, Brazil, 13 - 15 March 2023, pp.28-40

GLUCOSE TRANSPORTERS IN CANCER METABOLISM

Özdemir Ö. Ü., Berk Ş.
Latin American International Congress on Natural and Applied Sciences -IV, Rio De Janeiro, Brazil, 13 - 15 March 2023, pp.16-27, (Full Text)

CONSIDERATIONS FOR NORMALISATION OF RT-QPCR IN BIOLOGICAL RESEARCH

Berk Ş.
3RD INTERNATIONAL ANATOLIAN CONGRESS ON SCIENTIFIC RESEARCH, Kayseri, Turkey, 27 - 29 December 2022, vol.1, pp.222-226, (Full Text)

EPİGENETİC CHANGES İN COLON CANCER

Berk Ş.
7th ASIA PACIFIC INTERNATIONAL MODERN SCIENCES CONGRESS, Jakarta, Indonesia, 4 - 05 November 2022, pp.183-193 Sustainable Development

INSULIN-LIKE GROWTH FACTOR SYSTEM AS A THERAPEUTIC TARGET IN COLORECTAL CANCER

Berk Ş.
CUKUROVA 9 th INTERNATIONAL SCIENTIFIC RESEARCHES CONFERENCE, Adana, Turkey, 9 - 11 October 2022, vol.2, pp.1292-1301, (Full Text) Sustainable Development

mTOR SIGNALING PATHWAY AND ITS ROLE IN COLORECTAL CANCER TREATMENT

Berk Ş.
INTERNATIONAL CONFERENCE ON CHEMICAL AND BIOLOGICAL SCIENCES, Katsina, Nigeria, 20 - 21 September 2022, pp.80-88, (Full Text) Sustainable Development

CAENORHABDİTİS ELEGANS: A MODEL SYSTEM FOR CANCER RESEARCH

Berk Ş.
II-INTERNATIONAL CONFERENCE ON GLOBAL PRACTICE OF MULTIDICIPLINARY SIENTIFIC STUDIES, Batumi, Georgia, 26 - 28 July 2022, pp.857-866, (Full Text) Sustainable Development

CHARACTERISTICS OF CANCER STEM CELLS AS THERAPEUTIC TARGETS

Berk Ş.
INTERNATIONAL CAPITAL CONFERENCE ON MULTIDISCIPLINARY SCIENTIFIC RESEARCH, Lisbon, Portugal, 13 - 14 July 2022, pp.129-136, (Full Text) Sustainable Development

THREE-DIMENSIONAL CELL CULTURE SYSTEMS IN CANCER RESEARCH

Berk Ş.
2. INTERNATIONAL CAPPADOCIA SCIENTIFIC RESEARCH CONGRESS, Nevşehir, Turkey, 17 - 19 June 2022, pp.462-478, (Full Text) Sustainable Development

Investigation of phenolic acid content, cytotoxic and DNA damage protection potentials of Lycopodium clavatum

Berk Ş., Ergül M., Ergül M., Baltaş H., Altun A.
22. Ulusal Farmakoloji Kongresi, Antalya, Turkey, 4 - 07 November 2013

Investigation of the phenolic acid content, cytotoxic and DNA damage protection potentials of Thymus herba-borano

Ergül M., Berk Ş., Ergül M., Baltaş H., Altun A.
22. Ulusal Farmakoloji Kongresi, Antalya, Turkey, 4 - 07 November 2013, (Summary Text)

Investigation of Punica granatum and Olea europoea for their phenolic acid content and DNA damage protection potentials.

Berk Ş., Ergül M., Ergül M., Baltaş H., Altun A.
22. Ulusal Farmakoloji Kongresi, Antalya, Turkey, 4 - 07 November 2013, (Summary Text)

Investigation of Punica granatum and Olea europoea for their cytotoxic activity

Ergül M., Ergül M., Berk Ş., Baltaş H., Altun A.
22. Ulusal Farmakoloji Kongresi, Antalya, Turkey, 4 - 07 November 2013, (Summary Text)

Investigation of the cytotoxic and DNA damage protection potentials of O. syriacum and S. tomentosa

Ergül M., Berk Ş., Ergül M., Baltaş H., Tutar Y.
25. Ulusal Biyokimya Kongresi, İzmir, Turkey, 3 - 06 September 2013, (Summary Text)

Thymus herba barona türünün sitotoksik ve DNA koruyucu aktivitelerinin araştırılması

ERGÜL M., BERK Ş., ERGÜL M., BALTAŞ H.
25. Ulusal Biyokimya Kongresi, İzmir, Turkey, 3 - 06 September 2013

Investigation of antioxidant antimicrobial and DNA protective activities of Myrtus communis Ceterach officinarum Inula oculus christi.

Berk Ş., Çetinkaya S., Harun B., Hüsünet M. T., Çilkiz M., Tepe B.
2. Ulusal Moleküler Biyoloji ve Biyoteknoloji Kongresi, Antalya, Turkey, 15 - 18 November 2012, (Summary Text)

Screening of antimicrobial, antioxidant and DNA damage protection potentials of Pistacia khinjuk

Karagöz I. D., Kiliç I. H., Çakmak A., Tepe B., Hüsünet M. T., Çilkiz M., et al.
. 21. Ulusal Biyoloji Kongresi, İzmir, Turkey, 3 - 07 September 2012, (Summary Text)

Screening of antimicrobial, antioxidant and DNA damage protection potentials of Pistacia vera

Mustafa Ç., Kiliç I. H., Tepe B., Karagöz I. D., Hüsünet M. T., Işler D., et al.
21. Ulusal Biyoloji Kongresi, İzmir, Turkey, 3 - 07 September 2012, (Summary Text)
Books

MicroRNAs in Colorectal Cancer Metastasis

Berk Ş.
in: Current Debates in Molecular Biology and Genetics, Assist. Prof. Dr. Metin ERTAŞ, Editor, BİDGE Yayınları, Ankara, pp.120-145, 2023

Glucose Metabolism and Cancer

Berk Ş.
in: Current Debates in Molecular Biology and Genetics, Assist. Prof. Dr. Metin ERTAŞ, Editor, BİDGE Yayınları, Ankara, pp.64-91, 2023

IN SILICO ANALYSIS OF BIOACTIVE PEPTIDES

Pektaş A. N., Berk Ş.
in: Academic Research and Reviews in the Field of Science and Mathematics, Prof. Dr. Hüsniye Sağlıker, Editor, Platanus Publishing, Ankara, pp.558-571, 2023

EPIGENETICS AND CANCER

Berk Ş., Pektaş A. N.
in: Academic Research and Reviews in the Field of Science and Mathematics, Prof. Dr. Hüsniye Sağlıker, Editor, Platanus Publishing, Ankara, pp.572-585, 2023

TRANSCRIPTOME AND METABOLOME ANALYSIS IN CAENORH ABDITIS ELEGANS MODEL ORGANISM

Berk Ş., Pektaş A. N.
in: International Research in Science and Mathematics, Filiz ÖZBAŞGERÇEKER,Hasan AKGÜL,Hayri BABA, Editor, SERÜVEN YAYINEVİ, İzmir, pp.131-144, 2022

Caenorhabditis elegans as a model for anti-cancer drug discovery

Berk Ş.
in: CURRENT RESEARCH IN THE SCIENCE AND MATHEMATICAL SCIENCES, Prof. Dr. Cansu FİLİK İŞÇEN, Editor, Livre de Lyon, Lyon, pp.73-90, 2022

DNA BARCODING AS A TOOL FOR MOLECULAR SPECIES IDENTIFICATION

Pektaş A. N., Berk Ş.
in: THEORETICAL AND APPLIED ACADEMIC STUDIES IN THE FIELD OF BIOLOGY, Şifa TÜRKOĞLU, Editor, İksad Yayınevi, Ankara, pp.233-262, 2022

Colorectal cancer stem cell isolation, identification and culture

Berk Ş.
in: SPECIAL TOPICS IN BIOLOGICAL SCIENCES, Nimet YILDIRIM TİRGİL, Editor, İksad Yayınevi, Ankara, pp.63-90, 2022
Metrics

Publication

69

Citation (WoS)

290

H-Index (WoS)

9

Citation (Scopus)

320

H-Index (Scopus)

9

Citation (Scholar)

509

Citiation (TrDizin)

1

H-Index (TrDizin)

1

Project

13

Thesis Advisory

5

Open Access

1
UN Sustainable Development Goals